Vol. 4 No. 1 (2024): Journal of Deep Learning in Genomic Data Analysis
Articles

Deep Learning for Medical Image Segmentation in MRI Scans: Implements deep learning techniques for accurate segmentation of structures in MRI scans

Dr. Beatriz Hernandez
Professor of Data Science, Universidad Autónoma de Guadalajara, Mexico
Cover

Published 24-05-2024

Keywords

  • Deep learning,
  • Medical image segmentation,
  • MRI scans,
  • Convolutional Neural Networks (CNNs),
  • U-Net, FCN (Fully Convolutional Network),
  • DeepLab,
  • Data augmentation,
  • Transfer learning,
  • Dice coefficient,
  • Jaccard index,
  • Hausdorff distance
  • ...More
    Less

How to Cite

[1]
D. B. Hernandez, “Deep Learning for Medical Image Segmentation in MRI Scans: Implements deep learning techniques for accurate segmentation of structures in MRI scans”, Journal of Deep Learning in Genomic Data Analysis, vol. 4, no. 1, pp. 70–83, May 2024, Accessed: Oct. 06, 2024. [Online]. Available: https://thelifescience.org/index.php/jdlgda/article/view/17

Abstract

Medical image segmentation plays a crucial role in medical image analysis, particularly in Magnetic Resonance Imaging (MRI) scans. It automates the process of delineating specific anatomical structures within the scans, enabling downstream tasks like shape analysis, volume measurement, and disease diagnosis. Traditionally, this segmentation relied on hand-crafted features and machine learning algorithms. However, the recent advancements in deep learning have revolutionized this field. Deep learning models, with their capability to learn complex patterns from large datasets, have achieved superior performance in medical image segmentation tasks.

This research paper investigates the application of deep learning techniques for accurate segmentation of structures in MRI scans. We delve into the challenges associated with medical image segmentation, including image noise, intensity variations, and complex anatomical structures. We then explore the fundamental concepts of deep learning, specifically focusing on Convolutional Neural Networks (CNNs) – the workhorse architecture for medical image segmentation. We discuss various deep learning architectures commonly used for MRI scan segmentation, including U-Net, FCN (Fully Convolutional Network), and DeepLab. Additionally, we explore techniques for overcoming limitations associated with limited labeled data, such as data augmentation and transfer learning.

The methodology section details the implementation process, encompassing data acquisition, pre-processing steps, model selection and training, and evaluation metrics. We discuss various strategies for data pre-processing, including intensity normalization and image registration. We outline the training process, including hyperparameter tuning and optimization techniques. Finally, we present the metrics employed to evaluate the performance of the deep learning models, such as Dice coefficient, Jaccard index, and Hausdorff distance.

The results section presents the segmentation performance achieved using the implemented deep learning models. We compare the results with existing segmentation methods and analyze the factors influencing the accuracy. We discuss the strengths and limitations of the chosen models and potential avenues for improvement.

The discussion section delves into the broader implications of our findings. We explore the potential clinical applications of accurate segmentation in MRI scans, including improved diagnosis, treatment planning, and surgical guidance. We acknowledge the challenges and limitations associated with deep learning for medical image segmentation, such as the need for large datasets, potential biases, and interpretability issues.

The conclusion section summarizes the key findings of the research. We emphasize the effectiveness of deep learning techniques in achieving accurate segmentation of structures in MRI scans. We highlight the potential benefits for clinical practice and outline future directions for research in this domain.

Downloads

Download data is not yet available.

References

  1. Maruthi, Srihari, et al. "Deconstructing the Semantics of Human-Centric AI: A Linguistic Analysis." Journal of Artificial Intelligence Research and Applications 1.1 (2021): 11-30.
  2. Dodda, Sarath Babu, et al. "Ethical Deliberations in the Nexus of Artificial Intelligence and Moral Philosophy." Journal of Artificial Intelligence Research and Applications 1.1 (2021): 31-43.
  3. Zanke, Pankaj, and Dipti Sontakke. "Leveraging Machine Learning Algorithms for Risk Assessment in Auto Insurance." Journal of Artificial Intelligence Research 1.1 (2021): 21-39.
  4. Biswas, A., and W. Talukdar. “Robustness of Structured Data Extraction from In-Plane Rotated Documents Using Multi-Modal Large Language Models (LLM)”. Journal of Artificial Intelligence Research, vol. 4, no. 1, Mar. 2024, pp. 176-95, https://thesciencebrigade.com/JAIR/article/view/219.
  5. Maruthi, Srihari, et al. "Toward a Hermeneutics of Explainability: Unraveling the Inner Workings of AI Systems." Journal of Artificial Intelligence Research and Applications 2.2 (2022): 27-44.
  6. Biswas, Anjanava, and Wrick Talukdar. "Intelligent Clinical Documentation: Harnessing Generative AI for Patient-Centric Clinical Note Generation." arXiv preprint arXiv:2405.18346 (2024).
  7. Umar, Muhammad, et al. "Role of Deep Learning in Diagnosis, Treatment, and Prognosis of Oncological Conditions." International Journal 10.5 (2023): 1059-1071.
  8. Yellu, Ramswaroop Reddy, et al. "AI Ethics-Challenges and Considerations: Examining ethical challenges and considerations in the development and deployment of artificial intelligence systems." African Journal of Artificial Intelligence and Sustainable Development 1.1 (2021): 9-16.
  9. Maruthi, Srihari, et al. "Automated Planning and Scheduling in AI: Studying automated planning and scheduling techniques for efficient decision-making in artificial intelligence." African Journal of Artificial Intelligence and Sustainable Development 2.2 (2022): 14-25.
  10. Biswas, Anjanava, and Wrick Talukdar. "FinEmbedDiff: A Cost-Effective Approach of Classifying Financial Documents with Vector Sampling using Multi-modal Embedding Models." arXiv preprint arXiv:2406.01618 (2024).
  11. Singh, Amarjeet, and Alok Aggarwal. "A Comparative Analysis of Veracode Snyk and Checkmarx for Identifying and Mitigating Security Vulnerabilities in Microservice AWS and Azure Platforms." Asian Journal of Multidisciplinary Research & Review 3.2 (2022): 232-244.
  12. Zanke, Pankaj. "Enhancing Claims Processing Efficiency Through Data Analytics in Property & Casualty Insurance." Journal of Science & Technology 2.3 (2021): 69-92.
  13. Talukdar, Wrick, and Anjanava Biswas. "Synergizing Unsupervised and Supervised Learning: A Hybrid Approach for Accurate Natural Language Task Modeling." arXiv preprint arXiv:2406.01096 (2024).
  14. Pulimamidi, R., and G. P. Buddha. "AI-Enabled Health Systems: Transforming Personalized Medicine And Wellness." Tuijin Jishu/Journal of Propulsion Technology 44.3: 4520-4526.
  15. Dodda, Sarath Babu, et al. "Conversational AI-Chatbot Architectures and Evaluation: Analyzing architectures and evaluation methods for conversational AI systems, including chatbots, virtual assistants, and dialogue systems." Australian Journal of Machine Learning Research & Applications 1.1 (2021): 13-20.
  16. Gupta, Pankaj, and Sivakumar Ponnusamy. "Beyond Banking: The Trailblazing Impact of Data Lakes on Financial Landscape." International Journal of Computer Applications 975: 8887.
  17. Maruthi, Srihari, et al. "Language Model Interpretability-Explainable AI Methods: Exploring explainable AI methods for interpreting and explaining the decisions made by language models to enhance transparency and trustworthiness." Australian Journal of Machine Learning Research & Applications 2.2 (2022): 1-9.
  18. Biswas, Anjan. "Media insights engine for advanced media analysis: A case study of a computer vision innovation for pet health diagnosis." International Journal of Applied Health Care Analytics 4.8 (2019): 1-10.
  19. Dodda, Sarath Babu, et al. "Federated Learning for Privacy-Preserving Collaborative AI: Exploring federated learning techniques for training AI models collaboratively while preserving data privacy." Australian Journal of Machine Learning Research & Applications 2.1 (2022): 13-23.
  20. Maruthi, Srihari, et al. "Temporal Reasoning in AI Systems: Studying temporal reasoning techniques and their applications in AI systems for modeling dynamic environments." Journal of AI-Assisted Scientific Discovery 2.2 (2022): 22-28.
  21. Yellu, Ramswaroop Reddy, et al. "Transferable Adversarial Examples in AI: Examining transferable adversarial examples and their implications for the robustness of AI systems." Hong Kong Journal of AI and Medicine 2.2 (2022): 12-20.
  22. Reddy Yellu, R., et al. "Transferable Adversarial Examples in AI: Examining transferable adversarial examples and their implications for the robustness of AI systems. Hong Kong Journal of AI and Medicine, 2 (2), 12-20." (2022).
  23. Pulimamidi, Rahul. "To enhance customer (or patient) experience based on IoT analytical study through technology (IT) transformation for E-healthcare." Measurement: Sensors (2024): 101087.
  24. Ponnusamy, Sivakumar, and Dinesh Eswararaj. "Navigating the Modernization of Legacy Applications and Data: Effective Strategies and Best Practices." Asian Journal of Research in Computer Science 16.4 (2023): 239-256.
  25. Senthilkumar, Sudha, et al. "SCB-HC-ECC–based privacy safeguard protocol for secure cloud storage of smart card–based health care system." Frontiers in Public Health 9 (2021): 688399.
  26. Singh, Amarjeet, Vinay Singh, and Alok Aggarwal. "Improving the Application Performance by Auto-Scaling of Microservices in a Containerized Environment in High Volumed Real-Time Transaction System." International Conference on Production and Industrial Engineering. Singapore: Springer Nature Singapore, 2023.